rs48552447 SNP Detail

Summary

• ID
  rs48552447
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:23499296 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATGGTTAT CAGTGTTACA
  AGCTCCATAA AAATGGATGT GCAGGGAAGT AGGCTTCCAA ATGGACCTTG AGTGTGAGGA
  TAGAATTTCA ATTAAGGAAG ATAACTTCCC AGAAGAGCTG GGCTCACGCC CCAGGAATGA
  TGATGTCAAT CATTTTTTAT GCACCCTTGT GTCTTTCTCC TCCTGTCAAA TGAGGAACTT
  K
  GATGAGACCT GTTTAGGGTT ACTTAGCGTT ATGATATGGA AGGGGGCTTT GAAGTCATAG
  TATTGATATA GAATTGTGAT CACAACAAAA TAAGAGACTG ACTACCTCTG AGTGGGGACA
  CTGATGGAAG TCAGGGAAAC TCCTTATGCC ACAGAAGTCC TTGAAGAAGT AGGTAGTGTC
  GTGAGCACAA ACACTGTAGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61361350	NES16736223	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48552447					SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61361350	NES16736223	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:23499296 () rs orientation: forward

Symbol	Name	Function Class
Gm39311	predicted gene, 39311	789 bp downstream
Rr383080	regulatory region 383080	562 bp upstream