rs48552484 SNP Detail

Summary

• ID
  rs48552484
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr16:3895138 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTGTGGCC AAGAGAACAT
  TTAGTGGAGG ATGAGAGCGA CAAAACTTCG GAAAGCCATT GGGAAGCTAT GTTTATGCGA
  AACATAAATG TAATGAATGC CAGAAGCTTT AATATTCTTT CGCAGTTAAT TCTTGACTTG
  AGCCCTTTTA TGTAAAAATA GCTGTAAATA CGTATAATTT AAGTGTATGT AACGCTAACA
  Y
  CTTCACTGTT ACATGAGTGC GGGGTGGGAA AGTATAGATT AAGGTTATTC TCTCTCCTTT
  CCTTTCTCTT TCAATTCCAG GGATCAAACA CGCGGAGTTC ACTGGCTCCC TGAAGTCCTG
  GGTAACCGTT GGTTTTGCTC ACCGTAGTTA CCCCAGGGCT TGACTTCTGC GAGAGCTGAG
  CTTGTGAACA GCCGCGTGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52585008	NES15684330	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48552484					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52585008	NES15684330	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:3895138 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi7905	CpG island 7905			80 bp proximal
Rr370033	regulatory region 370033			451 bp upstream
Rr510763	regulatory region 510763			543 bp proximal
Rr510764	regulatory region 510764			777 bp proximal
Trap1	TNF receptor-associated protein 1			Intron
				Noncoding-Transcript-Variant
Tssr139752	transcription start site region 139752			504 bp downstream