rs48552948 SNP Detail

Summary

• ID
  rs48552948
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:52845724 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAATTATTT AATTATCTAA
  TGACCAATAA AGTACATATG GAAACTTAAA TTTTAACACA ATAGGAATGT AAATTTTTTC
  GTGCCATTAA TGTATAGTTT ATTTAGTGTT TGAAACATTA TCTCTGGGGA GATCTGCTTT
  CTCACTGTAG CTGTCTTTGT ACTTTTAGAA AGGCTTCTTG TATCTGTCAT TGCTCTATTT
  Y
  AGGTGTGAGC TATCTTCCCC CACTGAGAAA GGAGCTGCAG GAGATGTAAA GTCAGGACAG
  TGGTCCTATG ATCCCAGACA ATGACTGTTC AGTGCTGAAT TGGAACTGTC TACCTTCATT
  TTACTTTACG GCTTCTGTCA GCACCGTCCT GTTTGTTGTT TCATCAAGTT ACTTAGCTAA
  ATTCTCTGTG ATGTTCTCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52422088	NES15408945	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	C	C	C	C	C	C	C	T	C	C	T	C
ss137742232	ENSMUSSNP4800884	ENSEMBL	ENSEMBL_Sanger	f	SNP		C						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48552948					SNP	T	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52422088	NES15408945	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:52845724 () rs orientation: forward

Symbol	Name	Function Class
Akap6	A kinase anchor protein 6	within coordinates
Gm51971	predicted gene, 51971	within coordinates
Gm59837	predicted gene, 59837	549 bp downstream
Rr466054	regulatory region 466054	783 bp proximal