rs48553021 SNP Detail

Summary

• ID
  rs48553021
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:100910289 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGATTAAA GAGGTGCACC
  ACTACTATTC TGGTTATCAA GTTCTTTAAA CGACACAATT CCAAATGAAA ACAACAACTT
  AACACTCGGC TCTGGCTAGC CATGCAGGTC ATTGGAAGGC TGAGGTAGGA AGATAGAAAT
  GTCAGTGAAG ACCTGCCAGT ACTTCATAGT AAGTTCAAAA CCAGTCTTGA CAACTTAGCA
  R
  ATTCAAACTC AAGATAAAGT AAAAAGGGGC TGTTAGATGC TGTGTCAAAA AGCCCTCAGT
  CAGGCTGGAG AGATGGCTCA GCAGTTAAGA GCACAGACTT CTCTTTCAGA GGTCCTGAGT
  TCAATTCCCA GCAACCACAT GGTGGCTCAC AACCATTCGT AATTAGATCC GATTCCCTCT
  TCTGGTATTC TGGTATGTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss52685771	NES15536545	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs48553021					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52685771	NES15536545	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:100910289 () rs orientation: forward

Symbol	Name	Function Class
Cenph	centromere protein H	within coordinates
Cpgi6041	CpG island 6041	1524 bp proximal
Rr280869	regulatory region 280869	711 bp proximal