rs48553051 SNP Detail

Summary

• ID
  rs48553051
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:6622968 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGTGTGTG TGTGTGTGTG
  AGTGTGTGTT AGTTACCTCA CCCATCATTT CTAGAGGCTG ACAGCAATCA GATTAGGCTG
  CAGCAACACA ACTCTGCCTA CCACTTTCAC TAGCAATGTT TAATCAGATG TCTACATTTT
  AGCTGTAAGG TATTTAACTT TTCCCCTTGC CATGTTTGGA ACAAGTACAT ACATCAGTGT
  W
  ACGTCTGCAG TAAGTAACAG GGAAAGCAAG CATCCTGTGA AGCTAATTGC TGATCTGAAG
  TTTTTACTTG TACTATGTCA TAGGACAAAC AGTATCTTGG AGAGCTCTGT GTCACTGGGT
  GTGGATGGAG TAGTGTACGC CATTAATTCC TGTGCTTGGG GGACAGAGGC AGGTGGACTT
  CTCTGAGCTA GAGGCTAGCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	PWD/PhJ
ss62614957	NES17310604	PERLEGEN	MM_PANEL2	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	AKR/J	PWD/PhJ
rs48553051					SNP	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62614957	NES17310604	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:6622968 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Fyb1	FYN binding protein 1			Intron
				Noncoding-Transcript-Variant
Rr498833	regulatory region 498833			370 bp distal
Tssr130533	transcription start site region 130533			629 bp downstream
Tssr130534	transcription start site region 130534			598 bp downstream
Tssr133626	transcription start site region 133626			788 bp upstream