rs48553781 SNP Detail

Summary

• ID
  rs48553781
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:94886691 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAAGTCTCC TTTAATGAGG
  CTGTAAAATG TGGATCAGAA AATCAGCGTG GAACAGAGAA CTCCCTTTGC ATACAGCTGG
  CTGTCACCTT CAGAGGGACT GAGAGAGCTC AGAGCAGCAT CAAGCGGTTC CAGATCGTCT
  CTAAGATCCG AGGGTAGAAC CGAGCATGCT GTGTCTTGAG TCCAGAATGG GTGCTCTGGA
  R
  GCTGGTTTCC CACTCCGTAT CCGCTTGTTC TGCACATTCT ATAGGAGATG AGAGAGACTC
  AAGATACTGA GTGTTTGCCC CTCCTGTGTT TCTTCCTGCT GACCCCATAA AGTTCTACTT
  AACCCAGGAA CCCATCTAAC CTAGGAAAGG GGTTTGGGTG AACATACATT TTTTTTTTTT
  TAATCTTTGT TGCTAGTGGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63596417	NES17037870	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	AKR/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48553781					SNP	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63596417	NES17037870	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:94886691 () rs orientation: forward

Symbol	Name	Function Class
Gm23129	predicted gene, 23129	1672 bp upstream
Gm52203	predicted gene, 52203	within coordinates
Rr391133	regulatory region 391133	1839 bp downstream
Tmem117	transmembrane protein 117	within coordinates