rs48553791 SNP Detail

Summary

• ID
  rs48553791
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:96141977 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGACATCTGG CTCTCATTTC
  CTGGATAAGA TGCAGGAATA AGTTAAATAT AAACTTATAT ATCCTCCAAA CCTAGAAACT
  TTTCTGTATC AATTAGCACA TGGACTAAGG TAGTGATCAT CCCAAGTGTT GAATACATAA
  AGTGAAGCGA GTTCTCACAG AAAAGCTATA AATAACGAAT CTAGTGAACA AGCAGTTCCG
  Y
  TAACTCTTGA ATATATTAAA ATACAGAGGT CTTTGGCACA TGGCATCAAT ATCACTCCAC
  TAGGAAGACA GTCATTTCAT GACATTTATA CATATGTGTA CACACACACA TACACACTCA
  CACTAATTTT TTTTTCTTTG AAGCAAGGTC ATACTATGTA GCCTAGGCTA GACTCTAACT
  CATGATCCTA CTCACTCAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52170290	NES15315897	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48553791					SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52170290	NES15315897	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:96141977 () rs orientation: forward

Symbol	Name	Function Class
Gm40748	predicted gene, 40748	within coordinates
Gm48427	predicted gene, 48427	within coordinates
Tssr99082	transcription start site region 99082	812 bp downstream