rs48553792 SNP Detail

Summary

• ID
  rs48553792
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:51343321 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAGAG GACCCAGGTT CAATTCCCAG
  T
  GCCCACACAT CAGCTCACAA CTGTC                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss139474664	ENSMUSSNP4299721	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T
ss324621072	CHEV_14_51725539	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48553792					SNP	T	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:51343321 () rs orientation: forward

Symbol	Name	Function Class
Rnase4	ribonuclease, RNase A family 4	within coordinates
Rr288976	regulatory region 288976	1921 bp distal
Rr288977	regulatory region 288977	721 bp distal
Rr295428	regulatory region 295428	305 bp proximal
Tssr125402	transcription start site region 125402	975 bp downstream
Tssr125403	transcription start site region 125403	823 bp downstream
Tssr125404	transcription start site region 125404	683 bp downstream
Tssr125405	transcription start site region 125405	456 bp downstream
Tssr125406	transcription start site region 125406	379 bp downstream
Tssr128409	transcription start site region 128409	457 bp upstream
Tssr128410	transcription start site region 128410	437 bp upstream