rs48554941 SNP Detail

Summary

• ID
  rs48554941
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:4025290 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCGG AGTGGGGGCG GAGCCCGCCC
  A
  GCCGGTGGGC GGAGACATAG GCTCC                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss147038845	ENSMUSSNP7129941	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
SNP Consensus Information
SNP					Consensus Type	A/J
rs48554941					SNP	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:4025290 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6911	CpG island 6911	within coordinates
Gm2093	predicted gene 2093	231 bp upstream
Rimoc1	RAB7A interacting MON1-CCZ1 complex subunit 1	64 bp upstream
Rr369897	regulatory region 369897	within coordinates
Rr498628	regulatory region 498628	75 bp distal
Rr498629	regulatory region 498629	within coordinates
Rr498630	regulatory region 498630	240 bp proximal
Tssr133595	transcription start site region 133595	563 bp upstream
Tssr133596	transcription start site region 133596	48 bp upstream