rs48554998 SNP Detail

Summary

• ID
  rs48554998
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:177810320 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTAGGAACA CAAAATATAT
  TTGTTGAATG GGTGCGCAAA CACTGTGTCC TAGGACTGAG CTAATCTATG AGTTGCTACA
  CTCTTCCAAC CAGCGCAGGA TACTCTCACT AAATGTGAAT TCTGTTTTGA GGGTTAACTG
  AGACTTTCTT ACATCCCACT TTTACAAGGG TAACCTTCCT CCATTTATTG CCTCACTTCT
  T
  TATTTTCAAA AATTAAAAAA GAAAAAAAGC AGAAGGGCTT TGGAAAACTT AGTCATCACT
  TCTTCACATT ACGTTGTATT CACATCTCAC GCTACAAACT CCAAAAACAG CACTGAAAAC
  TAAAAGGCAA ATGGAGTCTC TGCTAACCAA GGACTAACAG CGAAGGTTCC CTGGACAAAC
  TCTATGTACT TTTGTCTTTT                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss146351728	ENSMUSSNP5326812	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs48554998					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:177810320 () rs orientation: forward

Symbol	Name	Function Class
Catspere2	cation channel sperm associated auxiliary subunit epsilon 2	669 bp upstream
Cpgi1085	CpG island 1085	334 bp proximal
Gm69850	predicted gene, 69850	within coordinates
Rr25806	regulatory region 25806	1063 bp distal
Rr29061	regulatory region 29061	80 bp proximal
Rr396636	regulatory region 396636	290 bp upstream
Tssr10371	transcription start site region 10371	673 bp upstream
Tssr10372	transcription start site region 10372	712 bp upstream