rs48555030 SNP Detail

Summary

• ID
  rs48555030
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:156265707 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAACCCCAG TATACAGACG
  GCTACATCCT TCAGAGAGGG TATTCAAGTT TCATATCTAC CATGGTTCTT CCTCATCATT
  TACTGAAGAC TCTGTCTTGC TGTGAAGCCC AGGCTGGCTT CAAACTCAAT AATCCCCCTG
  CCTCAGCAGC CTAAGAACTG GGTTTACAGA CATGTGTTAC CACACCTGGC CCAAATGGCA
  W
  TTTTAGACAA TTATCCAAGA ACCTGTTTAT GAACCCTAGA ATAACTCATT TTACAACCAA
  GTATTTGATT TAAACAGAAT TTAAAATGGG ATTTTTCTGG GATTTTTGAT TCTCAAAATG
  AGTGAGGAAG AAATGGGAAG TTCTAAGCAA GCAAACCTCA CACATACCAC TACCCCCCAG
  AAAAGGCAAG GGGAAGCCAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60329460	NES15835658	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48555030					SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60329460	NES15835658	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156265707 () rs orientation: forward

Symbol	Name	Function Class
Rr13324	regulatory region 13324	1107 bp distal
Rr31351	regulatory region 31351	47 bp distal
Rr396421	regulatory region 396421	522 bp downstream
Soat1	sterol O-acyltransferase 1	within coordinates
Tssr9565	transcription start site region 9565	1558 bp upstream
Tssr14442	transcription start site region 14442	1172 bp downstream