rs48555324 SNP Detail

Summary

• ID
  rs48555324
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:127684165 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTAAATTT AGAATGACCA
  CACTATAAGT CCTGTGCTGC TTCTTAAAAA TGTCAACAAA GAAGACATGG GAAAAGGAGA
  ATGTGGTACA GGTGAGTGGA AAGGAATGAA AGTGCCATGG GAGAATGAGC CCAACAGGAA
  AAATGTAGAA AAGAATGTGG AGGAGAGAAA AGGCAAGTTA GCGGAAAGAG ACACAGAGAT
  M
  AGGGATTACC AATTGGGATT ATCTGATGGA AATATATATA CTCTTCAAGA CAAGAAATAA
  ACTATTTTCA CCTCTTCTGA GGGGGTGGGG GTGGGGGGGA CACAGACTAG CATGGTAATT
  ACTCACAGCA CTGAATCCTC CTTCCCTGTG AATTTTTGGG TAGCATTTGG CATGGCTGAC
  ATTTTTTAAA ATATTTTTTA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss135874313	ENSMUSSNP148630	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C
ss320957934	CHEV_3_127593434	CHEVERUD	SCREENING_POP	f	SNP			C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs48555324					SNP	A	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127684165 () rs orientation: forward

Symbol	Name	Function Class
Fam241a	family with sequence similarity 241, member A	Intron
Rr584892	regulatory region 584892	592 bp distal
Rr584893	regulatory region 584893	195 bp distal
Rr584894	regulatory region 584894	280 bp proximal