rs48555336 SNP Detail

Summary

• ID
  rs48555336
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr16:91856217 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGAA AACAAAAGCA ACCGTTGTCC
  Y
  TTTTTTGAGC GTTTGGAAGC AGCTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss148559150	ENSMUSSNP5432083	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs48555336					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:91856217 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi8465	CpG island 8465			121 bp distal
Gm49711	predicted gene, 49711			Intron
Mrps6	mitochondrial ribosomal protein S6			Intron
				Noncoding-Transcript-Variant
Rr519574	regulatory region 519574			997 bp distal
Rr519575	regulatory region 519575			within coordinates
Slc5a3	solute carrier family 5 (inositol transporters), member 3			Intron
Tssr139459	transcription start site region 139459			1243 bp downstream
Tssr139460	transcription start site region 139460			1001 bp downstream
Tssr139461	transcription start site region 139461			821 bp upstream