rs48556883 SNP Detail

Summary

• ID
  rs48556883
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:69016918 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGAAGAAG AAAAAAACCA
  ACCAGCAAGC ACAGAGGTAC TACTGCAGGA AAACCATGAG TCAGTAAGCT TGGGTAAAAT
  ACAACAGTCT CCTTTCATGA ACAGTGGTCT GTCTTAGCAG AACACAGACC CTAGCCAGGC
  ACCAAGATGT GAGCTGTAGG GAAGGTTGAC CACCACATGA TTGGGATATT TCCATAAGTT
  K
  TACTGGACAC TCTTTGGGAA AATGTTAAGT AGACTGCAGT AGCCAAGCCA GGGCACTGAC
  GACATGTGCA TGTGCCTACA TTTCCCAGAC ACTCACGACA GACAGGGGTG TGGATGTGTC
  ACTTGAAATG GAAGCATCTG CTTGAATCCC AGAAGACATT CAGACACTTT CCGGCATCAC
  GGGAATCAGA GATGAGTAAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52647691	NES15469360	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48556883					SNP	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52647691	NES15469360	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:69016918 () rs orientation: forward

Symbol	Name	Function Class
Adcy2	adenylate cyclase 2	within coordinates
Rr277015	regulatory region 277015	118 bp distal
Rr280122	regulatory region 280122	1456 bp proximal