rs48557067 SNP Detail

Summary

• ID
  rs48557067
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:127432395 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTGATGATTC CCCCGAAGTC TGCCTTGGTG AATCCATGAG
  TTTTGTTGGG TTGTTTGCAG GAGTATGGGT AGCATGGAAG GACCAGCAAG GACGGCAGGG
  K
  GTGCAGGTGA CATCAAGGGA CTTTCACGAG GCTTGGAAAC TGCATGGGTT TGAGGGTGAA
  AGGTGGAGAT GAGGCGCCAT GTCGGCGTGG AGCCTAGAG                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147535485	ENSMUSSNP4319692	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48557067					SNP	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127432395 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mrps5	mitochondrial ribosomal protein S5			Coding-NonSynonymous
				Intron
Rr564567	regulatory region 564567			1882 bp distal
Rr564568	regulatory region 564568			within coordinates
Tssr20027	transcription start site region 20027			106 bp downstream
Tssr20028	transcription start site region 20028			267 bp upstream