rs48557327 SNP Detail

Summary

• ID
  rs48557327
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:69285024 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGTTGCTTCT GATGTTGGAA ACGGCAGCTC TCTCCATTCT
  TTGCCCATTT GGCATGTTTT ACTGTACAAG AAGGTGACTG GAGGGAGATG TTTGAGGCTT
  W
  GGTTTCCTGC CTGATTGCTT CTGGTTTTTT TCTGATAGTT TGGGGAGGTC ATAGTAGAGA
  AACTGGGTGT GGCTTTGCTT TTGTACCTGA TCAGTGAGCA                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	NOD/ShiLtJ
ss61416530	NES16802748	PERLEGEN	MM_PANEL2	f	SNP	A	T	A	A	A	A	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	NOD/ShiLtJ
rs48557327					SNP	A	T	A	A	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61416530	NES16802748	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:69285024 () rs orientation: forward

Symbol	Name	Function Class
Rora	RAR-related orphan receptor alpha	Intron
Rr682167	regulatory region 682167	558 bp distal