rs48557892 SNP Detail

Summary

• ID
  rs48557892
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:150461173 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGCAGGAGA GTTATGTGCC
  AGAGGCACAA ACATGTCTGG TTTGGACTTT AAGCACATTG AATGGTAATA AAATTTTTAA
  AAAAAAGCGC ATTCTGTTAT CTTCATCCCT GGGGAGGTAA GAAGGGAGAT TCTTCCCACG
  GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTAA CTAAATGTTC ACATTATACT
  C
  AAATGTTCTG CTATTCTCCC CAAATAGAAA AAGTACAAAA AAAAAATAAT TTGTGTTTTG
  TATCTAAACA CATCTGGAGA AAGCATGACA GTTTTGGAGC TAAGACCTCT GGTCACCCTG
  TGCTGGCTTA GTGCCAATTA TGACTTGATT CTGGAAACCA GATGTATGAC AAAGGCCTTC
  CCCCAGCCTC CAGAAGCAGC                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147949667	ENSMUSSNP1990854	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs48557892					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:150461173 () rs orientation: forward

Symbol	Name	Function Class
Acss1	acyl-CoA synthetase short-chain family member 1	within coordinates
Gm52532	predicted gene, 52532	within coordinates
Tssr26710	transcription start site region 26710	94 bp downstream