rs48558076 SNP Detail

Summary

• ID
  rs48558076
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:57960863 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTTCTGCT GACAGAGGCA
  GGAACTGGGG CCCATAGAGG GGAGTGGAGT TCAAGGTCAC TTCAAGGAGA AATGAGAGTG
  AGTGCAGGGC CCAGCATGGA GCCAGGCCAG GAGAGGCTCG GCTTTGTGAT CAGAGGCTAC
  TGAAGGAAGC AGAAAAGATG AAGGGTCAAA TGGGGCAGGC CTGGAGCAGA AAACTGTCCA
  Y
  GCCATGGAGA TGGCCAGAGT AGATTTTCCC AGAGCAAAAG GGCCATGCAA AGAGGGAACA
  AAGGCTTCAG CCTACACGGG TCTTTGCTAC ATGACCAGAC TCCCTTTCTC AAGGCCACAC
  GGTCTTCTCT GCTCCCCAAG GGAGCAGCTC TCCCATGTTA CAGACAATCA GGGCTCAGGG
  ACATGAAGTG ACAGAACTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	NZW/LacJ
ss61406218	NES16780354	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	NZW/LacJ
rs48558076					SNP	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61406218	NES16780354	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:57960863 () rs orientation: forward

Symbol	Name	Function Class
Ccdc33	coiled-coil domain containing 33	within coordinates
Rr679845	regulatory region 679845	1318 bp distal
Rr679846	regulatory region 679846	1445 bp distal
Rr679847	regulatory region 679847	34 bp distal
Rr679848	regulatory region 679848	303 bp distal
Rr679849	regulatory region 679849	505 bp proximal