rs48558255 SNP Detail

Summary

• ID
  rs48558255
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:16425514 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATTCCTTA TTAGAAGGAC
  TCCCAGGTCC TTCTAAGACA AAGACTACGA ATGCATCCTG AGCCAAGCAC ATGTGTGAAG
  CGATGGGTAG TACATGGATG ATGCTCAGGG CTCTGTGACT GACAGCCTAT CTGACTTCAC
  CCCTACAGGC AAAGCTCATC AATGGCCTGC TTCTCTTCAG ATTTCTGTGG CTCCTCAGTA
  R
  TGACACTGCC CTACCCACAG CCACCCATGC ACCAGTCTTA GTGGCCATTT GGGGGCTCTC
  TTTCCTGTCA GCCTTCTCAT GCAAGAAGGT ACCAAACCCT TCTGATGATT GTGACTACAT
  ACTTTCCAAA TCGTTCTTGG CCTCCCTTCT GCCTATCACT GCCATAACTG GGTAACACCA
  GAACCACAGG GAAGAAAGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss61574874	NES17524938	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs48558255					SNP	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61574874	NES17524938	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:16425514 () rs orientation: forward

Symbol	Name	Function Class
Gm36372	predicted gene, 36372	within coordinates
Rr269311	regulatory region 269311	489 bp distal
Rr386910	regulatory region 386910	165 bp downstream