rs48558391 SNP Detail

Summary

• ID
  rs48558391
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:114482217 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCTTATAT AAGGCTGCCT
  GTGAGCTACA GCAAGTGCTG CTGCTGTGCG CGAGCTGCTG TCATGGAAAG GCAGGCAATA
  CCTGCCACCA CACCTGCATG CACAACTGTA GTGGCGCAAG AAAAGCTGGC CTCAGCATTT
  TAGAGATTGA GCGCGATCGC AGGGTACTCA GTGCTAAGTC CCTGGGTCTC CCGGAGAACT
  Y
  GGAGCCCTGG GCTGCTTCCC CAAGGAGAAG ACTCAGAGGG ATGACTTGTT ACTGCCTCAG
  GAGTTTGTTA CACTTTTAGA TGTTACTGGA AGTCCAAAGA TGTTTTGCTT TGTTTTGTTT
  ATAAGCTATA GCTAGAGATA TTCACTGTGA TAAATTCTAA TGCAGTAAAA TTATAACAAA
  CTCTTAAGTT GCGATATATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62042834	NES17146436	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48558391					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62042834	NES17146436	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:114482217 () rs orientation: forward

Symbol	Name	Function Class
Ndufs4	NADH:ubiquinone oxidoreductase core subunit S4	within coordinates
Rr275010	regulatory region 275010	17 bp distal
Rr282460	regulatory region 282460	418 bp distal