rs48558526 SNP Detail

Summary

• ID
  rs48558526
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:71064926 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTGGCCAC GAGATAGCAG
  CAGAGGACGA TGGTGACCGC GGCAGCCACA TTCAGAGTGA ATGTGTGACA CTTGGTGACA
  CTAGGCATGA CAGGTGCTCC CCTGTGAGCT TCCAAATGGC ATTACATATT TATGCATTGG
  ATTATCTCAA ATTCTGAGAA ACTGTAGGTC TCTGGAACTC ACCATCTCCT GCCTCAGCAG
  S
  CCGGGATTAC TGGCCTTCGA CACCAACCTG GCTTAATTAG TTGTTTTAGG GAGGCTCAGC
  TGGTAGGAGC ACTGGCTGCT CTTTCAGAGG ACTCTGGTTC AATTCCCAGC ACCCACATGG
  CAGCTCACAA CTGTTATTTG TCCCAAACAT TGGAGGAGGA AGACCACGAT CCAATTAAAG
  GTGGCAACGT TAATTAAAGC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60632745	NES16282165	PERLEGEN	MM_PANEL2	f	SNP	G	G	C	G	G	G	G	G	G	G	G	G	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48558526					SNP	G	G	C	G	G	G	G	G	G	G	G	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60632745	NES16282165	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:71064926 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20476	CpG island 20476	1792 bp distal
Cpgi20477	CpG island 20477	396 bp distal
Gm45546	predicted gene 45546	within coordinates
Gm63790	predicted gene, 63790	1420 bp downstream
Rr400904	regulatory region 400904	1131 bp downstream
Rr400905	regulatory region 400905	92 bp downstream
Rr664836	regulatory region 664836	1873 bp distal
Rr664837	regulatory region 664837	within coordinates
Rr664838	regulatory region 664838	1326 bp distal
Rr664839	regulatory region 664839	646 bp distal
Rr664840	regulatory region 664840	116 bp distal
Tssr77777	transcription start site region 77777	1864 bp downstream
Tssr77778	transcription start site region 77778	1558 bp downstream