rs48558596 SNP Detail

Summary

• ID
  rs48558596
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:113364827 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCTT GTTTTAAAAG AAAAACATTT
  W
  AAAAAATCTT CAAAATTATG GCCAA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145682749	ENSMUSSNP727413	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	A
ss322424327	CHEV_7_120909104	CHEVERUD	SCREENING_POP	f	SNP				T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48558596					SNP	T	T	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:113364827 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19594	CpG island 19594	42 bp proximal
Rr653859	regulatory region 653859	within coordinates
Spon1	spondin 1, (f-spondin) extracellular matrix protein	408 bp upstream
Tssr68625	transcription start site region 68625	185 bp upstream
Tssr68626	transcription start site region 68626	247 bp upstream
Tssr68627	transcription start site region 68627	316 bp upstream
Tssr68628	transcription start site region 68628	435 bp upstream
Tssr68629	transcription start site region 68629	454 bp upstream
Tssr68630	transcription start site region 68630	493 bp upstream
Tssr68631	transcription start site region 68631	529 bp upstream
Tssr68632	transcription start site region 68632	651 bp upstream