rs48559236 SNP Detail

Summary

• ID
  rs48559236
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:45093832 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAATTCTCAC TCTCCTTTCC
  TTCGCTGGTG AAGCCTTGTG AGTAGAGAGA ATTCGATGTA CAAACAGACC ACTATGAGAA
  CTCATGGTGT CCAGGAATGG GTTAAAGCAG GTACAGATTC TAACCTCTAC CTCCCAGCTT
  CTGCCTGAGC AAGCTGCTTC TTCTCTGAGA GCCCGCTTCT AACACAGATT TAATAATAAC
  Y
  ATGCTTTGAG CTGTCTGCCA AGATCAAATG AATATAACTA TATGTAATGC TAATTACCCT
  TCACATACCT TCCTACCACT CCTGCTTCGC ACTTCCATGA GAGAACTGGG CCTCTGGTGA
  TGGCCCCAAC AGAACCAGGC TAGTCCTTGC TATTTTTGTT TTCAAGTGCA GAGAACAGAA
  CTCAGGGCTT TGCACGTGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61388761	NES16766280	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	C	C	C	C	T	T	C	C	T	C
ss136406361	ENSMUSSNP2601001	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48559236					SNP	T	T	C	C	C	C	C	C	C	T	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61388761	NES16766280	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45093832 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm57797	predicted gene, 57797			within coordinates
Rr677858	regulatory region 677858			460 bp distal
Rr677859	regulatory region 677859			within coordinates
Smim35	small integral membrane protein 35			Intron
				Noncoding-Transcript-Variant
Tmprss4	transmembrane protease, serine 4			Intron
				Noncoding-Transcript-Variant