rs48560295 SNP Detail

Summary

• ID
  rs48560295
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:98851275 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCACTGCGGC GGCGGGACTC AAAGACTAAG ATAAACTTAA
  AGCATGGAGA CCACCCTTTC CCCGCAGAGG TGACCAAAGC CTTAGACGTT TCCTTGCAGA
  W
  CTGGGGCGAC TGACACCCAC CCTCTATCTA CCGAGAGCCG GGGAAGGCTT GCTCACCATG
  GTTGCTGCTT CGCGGCTGCC GGGTGGATGG CGGAGGCGAG                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63622736	NES17045895	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48560295					SNP	T	T	T	T	T	T	T	T	T	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63622736	NES17045895	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:98851275 () rs orientation: forward

Symbol	Name	Function Class
B430209F14Rik	RIKEN cDNA B430209F14 gene	1987 bp upstream
Cpgi7685	CpG island 7685	within coordinates
Gm49450	predicted gene, 49450	within coordinates
Gm56698	predicted gene, 56698	1171 bp downstream
Rr370012	regulatory region 370012	67 bp downstream
Rr404613	regulatory region 404613	76 bp upstream
Rr509236	regulatory region 509236	127 bp distal
Rr509237	regulatory region 509237	within coordinates
Rr509238	regulatory region 509238	147 bp proximal
Rr509239	regulatory region 509239	299 bp proximal
Rr509240	regulatory region 509240	1800 bp proximal
Tssr132970	transcription start site region 132970	320 bp downstream
Tssr132971	transcription start site region 132971	350 bp upstream
Tssr136334	transcription start site region 136334	81 bp downstream
Tssr136335	transcription start site region 136335	134 bp downstream
Tssr136336	transcription start site region 136336	147 bp downstream
Tssr136337	transcription start site region 136337	193 bp downstream
Tssr136338	transcription start site region 136338	203 bp downstream
Tssr136339	transcription start site region 136339	243 bp downstream
Tssr136340	transcription start site region 136340	268 bp downstream
Tssr136341	transcription start site region 136341	294 bp downstream
Tuba1a	tubulin, alpha 1A	within coordinates