rs48560579 SNP Detail

Summary

• ID
  rs48560579
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:27721631 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTAACTGCTA TCGGATCTTA TTAATCTTTC CAATAACATT
  TTATTGAGAG ATAACTCAGG ATGTAAAAGC ATACTCTTTT TGCCTTTGTT TTCCACATGA
  M
  TGTATCTCAG CCTGTGCTTT TAAGTTTTAA CATAACTATA TGACCTTAAC TTATGACCCT
  TCTAGATGAA CACACAAAAG ATACCCATTT TTAGTATGA                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148886294	ENSMUSSNP7147374	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48560579					SNP	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:27721631 () rs orientation: forward

Symbol	Name	Function Class
Adrb3	adrenergic receptor, beta 3	798 bp upstream
Gm45470	predicted gene 45470	within coordinates
Gm63998	predicted gene, 63998	1778 bp downstream
Tssr80798	transcription start site region 80798	756 bp upstream