rs48560643 SNP Detail

Summary

• ID
  rs48560643
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:154493270 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAACCTTCAG TGTCATTAGA ACAGAAAAGA AACCGTGGGT
  ATCAAGCAGC TAATAGCTAT ATTCATTTAC AAGTTAATTA TTTATATTGG TATAATTACA
  Y
  AAATAGATCA TATTGATTTA CCATAGGAAC ATAATTTGTG TTAGCAAAAT ATTTATTTTT
  AGTTTTCAAA GATCAAAGAA TTGTTAAAAA ATTGGAAGA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss145765770	ENSMUSSNP526119	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs48560643					SNP	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:154493270 () rs orientation: forward

Symbol	Name	Function Class
Cacna1e	calcium channel, voltage-dependent, R type, alpha 1E subunit	Intron
Rr396402	regulatory region 396402	within coordinates
Rr420845	regulatory region 420845	270 bp proximal
Rr420846	regulatory region 420846	1458 bp proximal