rs48561866 SNP Detail

Summary

• ID
  rs48561866
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:18090472 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGGC ACTACATACA GAGACCCTGT
  Y
  ACTAAAGACC AGTTAATCAG TTATT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145227460	ENSMUSSNP3321073	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T
ss325312327	CHEV_17_18007174	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48561866					SNP	T	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:18090472 () rs orientation: forward

Symbol	Name	Function Class
Gm36907	predicted gene, 36907	within coordinates
Rr340653	regulatory region 340653	929 bp proximal
Tssr5021	transcription start site region 5021	931 bp upstream
Tssr5022	transcription start site region 5022	955 bp upstream
Tssr5023	transcription start site region 5023	1484 bp downstream
Tssr142818	transcription start site region 142818	1753 bp upstream