rs48562310 SNP Detail

Summary

• ID
  rs48562310
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:28855335 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGGTGGCGC AGTCTCCGCC
  GCAGAGCGCG CGATCCGGGC AGTGCAACGC CCGCAGCCAG CCGGCCAACT GCCGCAGGAA
  CTCTTCCTCT GTGTCCGGGC CTGCGGGAGG AAGAAGCCAT CAGGAAGCAG CGGGTTCCGC
  GGCTCTACCC GCCGTCCACC CAGCTTCTCA CGCACCGTGG CCGGCGCCCA GCACTGCGGT
  R
  CCCTCCTCTC GCCGCTCCAG AGCTCCCAGA GCCGTCAGCT CGGCCGCCAG CCGCGCGCAC
  AGCGCCCTGA AGTCTGCACA CGCGGGACCC CGAGACGCCC CCTCCGGGAG GGCATCGTAC
  CTGCGGCGGG GCACGCGTCA GTGCGAGTCC CTCTGCGTCC GCGTCCCCAG GCGAGTGCGC
  CCTTCCCGTA CCCCCAGGCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss60987104	NES16140769	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	AKR/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs48562310					SNP	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60987104	NES16140769	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:28855335 () rs orientation: forward

Symbol	Name	Function Class
1110035H17Rik	RIKEN cDNA 1110035H17 gene	within coordinates
Cpgi18740	CpG island 18740	within coordinates
Fam98c	family with sequence similarity 98, member C	within coordinates
Gm73440	predicted gene, 73440	543 bp downstream
Rasgrp4	RAS guanyl releasing protein 4	1949 bp downstream
Rr400219	regulatory region 400219	202 bp upstream
Rr644490	regulatory region 644490	1682 bp distal
Rr644491	regulatory region 644491	within coordinates
Rr644492	regulatory region 644492	187 bp distal
Rr644493	regulatory region 644493	263 bp proximal
Rr644494	regulatory region 644494	286 bp proximal
Rr644495	regulatory region 644495	411 bp proximal
Rr644496	regulatory region 644496	1400 bp proximal
Tssr65599	transcription start site region 65599	242 bp downstream
Tssr65600	transcription start site region 65600	219 bp downstream
Tssr65601	transcription start site region 65601	156 bp downstream
Tssr71610	transcription start site region 71610	294 bp upstream
Tssr71611	transcription start site region 71611	279 bp upstream
Tssr71612	transcription start site region 71612	180 bp upstream
Tssr71613	transcription start site region 71613	26 bp downstream
Tssr71614	transcription start site region 71614	53 bp downstream
Tssr71615	transcription start site region 71615	262 bp downstream