rs48562787 SNP Detail

Summary

• ID
  rs48562787
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:124144300 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGATGCAGAC TGGCCTGGCA
  CAAACAGCGC TCCCTTGGTG CACAGAACCT GCTCTCTTAC TTACCACGGA CCTACAGTTC
  TAAAATCAGG TGGGCACGCT GACCCAGGGC ACCCAAGCCC TTGGCCCAGA TGCTGAACCG
  CACAGCCTCT GTTTGCAGAG CTCGGCACGG CAGGCAGAGG ATGTCTTGCA GGAAGAGCAG
  S
  CACCCGAGCT CACTGCAGGA TGAAGCCTGG CTGGTGTGGG GCCATCCGTG GAGGGGGTCT
  CTGGGGCAGG GCTGGTGGGT ACGGTGACAC CAACTGTGCG GAGAATCCTT GCTGAGAGGG
  GAGGCCCACT CTGGGAGGCA GGGGTGGGCA CTGTAATCCC GGGTATGCAG AAACCTGTCC
  CGAGCCCATG GCAGCAGCGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60835797	NES16016898	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48562787					SNP	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60835797	NES16016898	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:124144300 () rs orientation: forward

Symbol	Name	Function Class
Gm37939	predicted gene, 37939	86 bp downstream
Tssr48832	transcription start site region 48832	1229 bp downstream
Tssr48833	transcription start site region 48833	230 bp upstream
Tssr53284	transcription start site region 53284	589 bp upstream
Tssr53285	transcription start site region 53285	83 bp upstream
Tssr53286	transcription start site region 53286	234 bp downstream
Tssr53287	transcription start site region 53287	314 bp downstream
Vps37b	vacuolar protein sorting 37B	within coordinates