rs48562956 SNP Detail

Summary

• ID
  rs48562956
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:122629401 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAACTTATC AATAGAGAGA
  AAGAAGAGAA TTAAAGTAAC ATGAATAGGT ATCTGTGGGA TTTGTGGATG GGTTTAGGGA
  GGTTTTCTTC CCCATAGTTA AATTGTGCTT TGTATAAAAT GTAAATAAGT GACATAAAAT
  GTAATCTTCT GTGTTGCTGT GACATTTGAG TCTTCCCTAG CTCTCTAAAA GGAGTGATTC
  Y
  GGAGGAGAAG CAAATGGAGA TTTATTAAAA CGAAACAAAA CAAAACAACC CCTCAGTACT
  TAGTTTATAT TTAGTCTGAT GGTTGCTTTT CTTCAAAGAT TAGTTTTCAT AATTTAATCT
  TTCAAAAAAA AATGTGCTAT GTGAATGAAC ATTTTGCCTG TATTTATGTA TGGATGTATG
  GATGTGCACC ATGAGTGTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60938554	NES16184818	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48562956					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60938554	NES16184818	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:122629401 () rs orientation: forward

Symbol	Name	Function Class
Rr638242	regulatory region 638242	1793 bp proximal
Tssr62939	transcription start site region 62939	1930 bp downstream