rs48563060 SNP Detail

Summary

• ID
  rs48563060
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:57883266 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGACAGTTT TCCTTCTGTA
  AGGAACTGCT GATTTAGTCT GAATAATGTT CTCCCTAATT AATAAAATTT TGGTCAATGT
  TCATTATACA CTTAATTAAA ATAGTACAAG TGAACTTTTA TAAAAACATG ACTGTGATTT
  TGGAAGCAAA TGGGTACCTT TCTGTTAGTA TCAGAGTGCT CCATTTTATG AAAATTAAGC
  R
  TCAACCTGCT TGTGCATTAG CACATATATT TCAGCAGTAA CATATCTGCA AAGTGATGCC
  AGCTCTACAC AGCATCCTGA CTCATTCTTC AGGAGAACGC TTGCAAGGCA GTTCACCTGG
  TTATAACTAA GGACTCTTTC CTGAAGCCCA GCAAATACGC ATATCTTTCT TTTACATTTG
  GCTTAGTATT CTGGGCAAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss61167715	NES16674299	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs48563060					SNP	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61167715	NES16674299	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:57883266 () rs orientation: forward

Symbol	Name	Function Class
Gm42635	predicted gene 42635	within coordinates
Pcdh7	protocadherin 7	within coordinates
Rr125228	regulatory region 125228	1265 bp distal
Rr125229	regulatory region 125229	465 bp distal
Rr125230	regulatory region 125230	within coordinates
Tssr46296	transcription start site region 46296	1368 bp upstream