rs48563231 SNP Detail

Summary

• ID
  rs48563231
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:14183238 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAGGCTCTGG AGTGAGTTGG CTATGGGGCC TGATTTGATT
  TGTGGTACCT TCTAGCTTTC CACCTCCCTG AACATTGTAA CCGACCAGTT GGCAAACAGG
  W
  CCCAGTGACT GGTGTTCCTG GGGTAGCAGG AGGCCCTGGA AAGCCTGCCT GCTTTGCTTT
  GCTTCCCTCT CTCCTTCCTT ACCTCCCTCC CTCCCTCCCT                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
ss52597255	NES15697380	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	A	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
rs48563231					SNP	T	T	T	T	T	A	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52597255	NES15697380	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:14183238 () rs orientation: forward

Symbol	Name	Function Class
Abcc1	ATP-binding cassette, sub-family C member 1	within coordinates
Tssr137194	transcription start site region 137194	350 bp upstream