rs48563807 SNP Detail

Summary

• ID
  rs48563807
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:138115753 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAGGCGGGGA ATTGGTCCCG GTGGGCTTTG TGCGCACTGG
  ACAAGGATTT GCTCAAGTCT GGAAAGATTT TTAGACGATC GTTTGTAAAA CGCGTATAGG
  R
  TAGAAAGGTG ATTGATTTAT TTGGTGGCTG ACATAGTTGG AAATCTGTTG AAAGGGGACA
  CTTAAAGAAT TGTGAACAAC AACAACAAAA TCAATACAGG                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60847508	NES16003374	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48563807					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60847508	NES16003374	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:138115753 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16853	CpG island 16853	210 bp distal
Gm71396	predicted gene, 71396	1763 bp downstream
Rr399441	regulatory region 399441	366 bp downstream
Rr623030	regulatory region 623030	440 bp distal
Rr623031	regulatory region 623031	within coordinates
Rr623032	regulatory region 623032	906 bp proximal
Tssr49413	transcription start site region 49413	505 bp downstream
Tssr54072	transcription start site region 54072	623 bp upstream
Zscan21	zinc finger and SCAN domain containing 21	within coordinates