rs48564387 SNP Detail

Summary

• ID
  rs48564387
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:86234063 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACCTAGAAA CTGGGGAGAA
  ACCCTTTGAA ACATCTTCCA GCTCTGACAT GGCTGATTTA AGAATGGACA CAGACTGTAC
  GCCTACCCAC ACAAGACACT GCACAAAAAG CACATAAAAA TAAGACATGA AATGAAAAGG
  AAGTTAGTGG ACTGTGGGGT AGATAAGGAA GGTTACCCTG GTGGAAGGAA CTGTTTATGA
  Y
  ACATTATAAT ACACATTTGT TTGTGTGTGT GTGTCTATAT ATACATATGT ATGAAATTGT
  CAAAAACTTA AATTATCAAA AAAGGGAAAG ATAGTCCTAA TGTCCAGACT TATGAGCTCC
  GTTTGATGAA GTACGATATC CACCCTCTAG CCTGGTATCT GAGAGAACAG TCAAGTAAGA
  GAGGATCCTC ACACTGTTAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	SM/J
ss60286300	NES15785407	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T		C	T
ss325489966	CHEV_17_86325975	CHEVERUD	SCREENING_POP	f	SNP						C			T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	SM/J
rs48564387					SNP	T	T	T	T	T	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60286300	NES15785407	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:86234063 () rs orientation: forward

Symbol	Name	Function Class
Gm30117	predicted gene, 30117	within coordinates
Rr532331	regulatory region 532331	1669 bp proximal
Rr532332	regulatory region 532332	1901 bp proximal
Tssr149724	transcription start site region 149724	1928 bp downstream