rs48565554 SNP Detail

Summary

• ID
  rs48565554
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:70912429 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGTGGTTCT TGTGTGTAGG TGGTCATGGC TCAACAGTAA
  AAAGCCCAGA CTGCTTCTCC AGAAGACCTG AGTTTGCATT ACAGCGCATG TTCAGTATAA
  Y
  CCTGGCTCCA GCCTGTCTGA CACCCACTTC TGGCCTCCAG GGGCACATAC ATGCATGTGG
  CATGTGCATA TAAAGGCATA TACACATAAA CAATAAAAT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss132379968	ENSMUSSNP1935751	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
ss323738917	CHEV_11_70835105	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48565554					SNP	C	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:70912429 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3205	CpG island 3205	1497 bp distal
Derl2	Der1-like domain family, member 2	1762 bp upstream
Mis12	MIS12 kinetochore complex component	within coordinates
Rr369277	regulatory region 369277	1637 bp downstream
Rr450471	regulatory region 450471	1982 bp distal
Rr450472	regulatory region 450472	1773 bp distal
Rr450473	regulatory region 450473	1332 bp distal
Tssr102807	transcription start site region 102807	1986 bp downstream
Tssr102808	transcription start site region 102808	1965 bp downstream
Tssr102809	transcription start site region 102809	1950 bp downstream
Tssr102810	transcription start site region 102810	1715 bp downstream
Tssr102811	transcription start site region 102811	1665 bp downstream