rs48567173 SNP Detail

Summary

• ID
  rs48567173
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127078368 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTCACTTCT GAGCATCTTG
  TCCCTCAACT AAGATCCCCG ACTTGGGAAA CTTGAAGGAA AAGTCTCTGT TTGCTGCCAT
  TTTGTGCACT GCAAAATTGA CCAGTTTCCT AACTATGTGT GTTGGGGGTA AAAAGGCTTT
  GTAGAAACTA CTATTTCAAG CACTTTGGGT TCTGTACATT TCTGTTTTTA CAAATGAATG
  Y
  TGTGTGTCTT AAATCCTCAA ATGCACTTAA ACTCTATATA CAGACATGAC GTACCCCACC
  ACAACAACTG ACTGTAAGGA GAGCCCACAT TTTCCTACAT GTCGCATTCA TTCAGCTCAG
  TTATTCAGAG AAGGTAAGGA AGTTGGGCAG ATGTCTCACG AATCTTGACC CCTTCTGATC
  CTGTCATCCT GGACCAGAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135859326	ENSMUSSNP2498298	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
ss320952643	CHEV_3_126987637	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48567173					SNP	C	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127078368 () rs orientation: forward

Symbol	Name	Function Class
Ank2	ankyrin 2, brain	within coordinates
Gm42971	predicted gene 42971	within coordinates
Rr74269	regulatory region 74269	1008 bp proximal