rs48567447 SNP Detail

Summary

• ID
  rs48567447
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:34934189 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTCGT GCAAAAAAGA AGAAAAGGTA
  R
  CACTCAGGCA CCGCTGGGAT TCGAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss148805428	ENSMUSSNP2173310	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss322156719	CHEV_7_36019783	CHEVERUD	SCREENING_POP	f	SNP		G	A
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs48567447					SNP	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:34934189 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18864	CpG island 18864	within coordinates
Gm38989	predicted gene, 38989	61 bp upstream
Gm73040	predicted gene, 73040	585 bp upstream
n-TTagt9	nuclear encoded tRNA threonine 9 (anticodon AGT)	6 bp downstream
Rr645337	regulatory region 645337	1379 bp distal
Rr645338	regulatory region 645338	72 bp distal
Rr645339	regulatory region 645339	112 bp distal
Rr645340	regulatory region 645340	within coordinates
Rr645341	regulatory region 645341	596 bp proximal