rs48567456 SNP Detail

Summary

• ID
  rs48567456
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:100805642 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGCC TCTCCTGGGA CACGCCTGCT
  R
  TTAGGGACTG TCCCTGTGGC CGAGT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss137996610	ENSMUSSNP1182817	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss324138594	CHEV_12_102077593	CHEVERUD	SCREENING_POP	f	SNP		G	A
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs48567456					SNP	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:100805642 () rs orientation: forward

Symbol	Name	Function Class
Dglucy	D-glutamate cyclase	within coordinates
Gm56544	predicted gene, 56544	1950 bp upstream
Rr403460	regulatory region 403460	1856 bp upstream
Rr471348	regulatory region 471348	1961 bp distal
Rr471349	regulatory region 471349	1737 bp distal
Rr471350	regulatory region 471350	1204 bp distal
Rr471351	regulatory region 471351	within coordinates
Rr471352	regulatory region 471352	480 bp proximal
Tssr117329	transcription start site region 117329	1950 bp upstream