rs48569754 SNP Detail

Summary

• ID
  rs48569754
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:136096897 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTATAAGAG TTGCCTTGGT
  CATGGTGTCT GTTCGCAGCA GAAAAACCCT AAAAGACATT CTCAAAGCCC CTGAACACAC
  CAAACTTGCT CCCGTCTTCA AGCATTCCCC AGGGCTTCGG ATCCCCTTGT GGCATGTACT
  TTTTAATCCA TCAGATATCT ACACAAATGC CACCTCCTCC TAGAGAGCAT CCTAGATAAC
  A
  TCACCTGAAA AGACTCCTCC CTCTTTTATT TCACTTGAGC AACTTTCTAA CAGCAAATTG
  TGTTAATTTC TGTCAGATCT GCAGCAGCAT GTCTCTTGTC TGTTTTCCAC CCCACTAAGC
  AGCAGTAAAC GGCTGCTTAA TGCACGGTGG GGGATCACCC AGCACACAGA TTCAAAGATC
  AAATTCATTT ATCTGATTCC                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss133829321	ENSMUSSNP3443595	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs48569754					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:136096897 () rs orientation: forward

Symbol	Name	Function Class
Grin2b	glutamate receptor, ionotropic, NMDA2B (epsilon 2)	within coordinates
Tssr2039	transcription start site region 2039	388 bp upstream