rs48571888 SNP Detail

Summary

• ID
  rs48571888
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:8813564 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGAGGATGT GAGAGGGAGC
  GTCACCAAGA GCTCTCACTT TGGGAGGGTC AAAGCAGAAA TTTAGCATCC TGAAGGGAAG
  GGCAGGTCCT GGCAGGGGCA CTTAATGTCT CCACTCTCCC CACTGACCCC CAAGAAGGTC
  CCTAAACTTT TCAAAAGAAG CTTTGGGTGT CAGGGGTTGG GGCCTTGAAC CTGTGTCTTG
  R
  ATATCCCAGG AAGTCAGGGC AGTTGGATGC TGAAGTTCAG TGAGAAAACT GGCCCCAGAA
  AAACAAAGGA AGGCCTGGGG TAGGGAGTGT CCAGGCAGCT GGAGTCAGCA GAGAGGGTTG
  CTGTGCAGGG ACACAGGCTG AGTCTAAAGC TTTAGTGACC ATAGCCATAG CAGGGAAGGG
  CAGAAAGTGC TGAGCCTAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63639807	NES17055932	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48571888					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63639807	NES17055932	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:8813564 () rs orientation: forward

Symbol	Name	Function Class
Gm30444	predicted gene, 30444	1827 bp upstream
Gm49447	predicted gene, 49447	388 bp downstream