rs48572161 SNP Detail

Summary

• ID
  rs48572161
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:132794653 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCAATGGC TTTAAATATT
  ATCCGACTCC TACATTTATT TCAGGCACAT CTTGCCTGAG CTCCAGGCTC GACATTTCAA
  TTGGGTATTT TTCTAAATGT GTTCATTTTT CTTTCCTGGC CCCATTGCTG ATGAAATAGC
  AACACCATTC ACCTACCTCC AAGCCTAAAG TCTCACCCAA TTCCTTCATC TCTCACACCT
  R
  CTATCTCCTT CTTTGAAATA GAACCAAAAT CTCATCACTT AGCACCCACA CTGCTGCGCT
  TAGTACTGCT GGACTGGATG TCCCAGGAAG GCTGGTACCT AAGAGGGGGC TCCCTTCTCT
  GAGAAGGGGA GGGGTGGGGA GGGGAGGGAT TTGTAAGGAT GAGACTCTGA GGAGTGGGGG
  CACAATCCTG ATGTAAAGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	MSM/Ms
ss135916525	ENSMUSSNP6585471	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	DBA/2J	MSM/Ms
rs48572161					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:132794653 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gstcd	glutathione S-transferase, C-terminal domain containing			Intron
				Noncoding-Transcript-Variant
Rr585500	regulatory region 585500			1572 bp proximal