rs48572183 SNP Detail

Summary

• ID
  rs48572183
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:20304872 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATACC AAATATTGTT ATGAAATTAT
  W
  AAGAAGCACA AGGTCAATAC AGAGA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	LG/J	SM/J
ss146331190	ENSMUSSNP1329664	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss320218531	CHEV_2_20221688	CHEVERUD	SCREENING_POP	f	SNP		T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	LG/J	SM/J
rs48572183					SNP	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:20304872 () rs orientation: forward

Symbol	Name	Function Class
D2Ucl3	DNA segment, Chr 2, University College London 3	513 bp proximal
Etl4	enhancer trap locus 4	within coordinates
Gm17171	predicted gene 17171	756 bp downstream