rs48572811 SNP Detail

Summary

• ID
  rs48572811
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:66079498 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCGAGCCC CAAGGTTGCC
  AGATACCCGG CCGCAGATGC AGCGATCCGG GGCGCTCGGG AGAATCTGGT GGCGGGCGGA
  GGCGGCTGGT GCCGGGCGCG GGATGGAGCG CGCGGGACAT GGGGAAGCGC ACGGGAGGCG
  GGCAGCGCAG AGACAATGGC GCACAGAAGC CGGGATCCCC CGTAGGATGG CTCCAGGACT
  Y
  ACCCCGAGAA GACACACTTT GAGCTCCCGT ATCGCCATCA TGTGCTCTGG GTCGGGCCCG
  GCCGGGGCTC AGCAGCATCG TCCGGGCCAC ACCGCGCCCA GCCTGCGTCC TGCTGTCTCC
  CAGGACTCTC GCCGGCCGCG GGGCGGAACC GCCAAGGCGG CTATTTCTGG GCCTCGGCCT
  CCGCTGTCGG TCACGTGCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	CAST/EiJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62850167	NES17384872	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	CAST/EiJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48572811					SNP	T	T	T	C	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62850167	NES17384872	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:66079498 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9418	CpG island 9418	within coordinates
Rab31	RAB31, member RAS oncogene family	within coordinates
Rr529807	regulatory region 529807	within coordinates
Rr529808	regulatory region 529808	29 bp proximal
Rr529809	regulatory region 529809	127 bp proximal
Rr529810	regulatory region 529810	1074 bp proximal
Rr529811	regulatory region 529811	1179 bp proximal
Rr529812	regulatory region 529812	1384 bp proximal
Tssr149074	transcription start site region 149074	132 bp downstream
Tssr149075	transcription start site region 149075	162 bp downstream
Tssr149076	transcription start site region 149076	183 bp downstream