rs48572871 SNP Detail

Summary

• ID
  rs48572871
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:145733577 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACAAAGCAG ATTCCAACCA
  AGCCAGTAAC TTTATGAGGT TTATGAGTGT ACAAGGAGCC TGAGAGACTC AAAGGCAGCT
  GCCTCTGGAA GCTGCAGCCC AGGTGTGCCC TACAGGACTC AGGCAGCTCT GGGAAGCATC
  TCGCCCCTCT GGTAATTGGT CCCTGCTTAC AGACTTGTTA GCCTTGCGGT TCCCTATCTT
  Y
  TGAGTCCTGT AAATTTTTGG CTTCTTGAAT ATGAATCTTC CTCAGCCCCC AGGAAGCAAT
  GCTTCACTGG AGGAAGAAAC TGCATAGCAC CTTTGTGTGC TGCGTTAGCT CAGAGCCAAG
  CAAACAGGCA TGGGAGAAGC GGCAGCCGAG TCTTTCCCCG CCTCAATAGT TTGTATATAG
  AGCTGAATGT GGCATGGTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61096125	NES16611378	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48572871					SNP	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61096125	NES16611378	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:145733577 () rs orientation: forward

Symbol	Name	Function Class
Gm40166	predicted gene, 40166	within coordinates
Rr586905	regulatory region 586905	53 bp distal
Rr586906	regulatory region 586906	1479 bp proximal