rs48572880 SNP Detail

Summary

• ID
  rs48572880
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:58419326 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGAGGTAGC CAGATTAGCA
  TAAAAGTAAA AACTGATCAT TTGACTGCTC AGCTACTGAA AACTAGTTTT AAATCAATAT
  TGTTACTCTG TGTGGTTATT GGGGACTGGA ATAAAGCAAA GAAATACAGC TGCTGGATTA
  ATTTATGGCT ATATTTTTAT TAAAAAAGTA ATTCACTTAC ATTCTACAGT GATTTCTCCC
  R
  CTTTCCCTGT TCTGCGAGAA AACAGACTGC TCAGTGTTCA CTTGTTCCTG GAGTCTGGAA
  TGTCTGTCTC CTCCACTTAA AACTTCTCCG TTCTTCAAAT TTAGCCCCAT TGCAATTCTG
  ATCTGCCTTC TCGTTAATGT TCCTGCACTT ACACTTAATT CTGTTCTTCA TGGACTCTTT
  CAACAGCTAC CACTGTATCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52645703	NES15464209	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	A	A	A	A	A	G		A	A	G	A
ss149066401	ENSMUSSNP1827336	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A						A				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48572880					SNP	A	A	A	A	A	A	A	A	A	A	A	G	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52645703	NES15464209	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:58419326 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5724	CpG island 5724	1839 bp proximal
Gkap1	G kinase anchoring protein 1	within coordinates
Rr276751	regulatory region 276751	within coordinates
Rr281488	regulatory region 281488	1474 bp proximal
Rr388493	regulatory region 388493	110 bp downstream
Tssr122822	transcription start site region 122822	409 bp downstream