rs48573006 SNP Detail

Summary

• ID
  rs48573006
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:59373708 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCATGGAGT TGATTGCGAT
  AGAAAATTTG AGTGAGATGT CCTGAAATTG TCTTTTAATC ATAGAGGGCT GTTGCTTTAC
  TGAGATAGAT TTAATGTGGA ACTGAAAAAT AGAGTCAAAT TTTCACAATC TCTTTGGAAC
  CCCCGAATCC TGCTGTGCTT AAAGACAGAG GTTCCAAATT GGTTTCCCAG GGAAGGAAAG
  Y
  GAGAGGCACA GATTAGCATT CAGGAAATAT GCTAGGGAGT GCTTTCTGGG TCAACATCTG
  GGAAGCCAAG CAAGGGAAGC TGACTTGCCA GCCAGCATAT CTCTTCCCAT GCCTGGAGTG
  CCTTAGCTGC CTTGCTCAAC ACTTTTCCTA GCACCAGGGA ACTAAGGGAA CAGAATTATA
  ATCACACACA CACACACACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	PWD/PhJ
ss62814830	NES17369868	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	PWD/PhJ
rs48573006					SNP	T	T	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62814830	NES17369868	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:59373708 () rs orientation: forward

Symbol	Name	Function Class
n-TVcac3	nuclear encoded tRNA valine 3 (anticodon CAC)	1995 bp upstream