rs48573178 SNP Detail

Summary

• ID
  rs48573178
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:25113650 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGAATATAT GAACTATAGG
  CAAAAAGGGA TTCTTGAACT GTGTTGGTCC AGGTTGGTGG AGTTCTTGGT TCAAGGCAAA
  AGGAGAAAGC TGATAATGCC CACAGTCAAC ATTAAAGACG ATTGTGCCAG CCAGCTCACG
  AGGGAGGGGA GCGTTTATTT CTGAAACTTG CACTCTTAGA GGTGTTATTT CATGGCCTGT
  Y
  TGCCCTGTCA TTTTTGAGCC TGTGCTGAGA TACATCATGG AGAGAGTGCA TAGTGGAGGA
  AACTGCTCAC TTCTCGCATC TAGGAAGCAA AGAAGATAGC AAGAACCATA AACCTAATAG
  TTCATTTAAG GGTGTATACG CCACCATGAC ATAACTGTTT TCTACTGAAC TCTGTCTCCT
  AAAGGTTCTT CTGATCTCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60980606	NES16142448	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C		C	T	C	C		T
ss322121699	CHEV_7_26199244	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs48573178					SNP	C	C	C	C	C	C	C	C	C	C	T	C	T	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60980606	NES16142448	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:25113650 () rs orientation: forward

Symbol	Name	Function Class
4732471J01Rik	RIKEN cDNA 4732471J01 gene	within coordinates
Cxcl17	C-X-C motif chemokine ligand 17	1339 bp upstream
Rr164493	regulatory region 164493	150 bp distal
Rr170192	regulatory region 170192	1899 bp distal
Rr170193	regulatory region 170193	651 bp distal
Tssr2143	transcription start site region 2143	1423 bp upstream
Tssr2144	transcription start site region 2144	1275 bp upstream
Tssr2145	transcription start site region 2145	1251 bp upstream
Tssr2146	transcription start site region 2146	1238 bp upstream
Tssr2147	transcription start site region 2147	1193 bp upstream
Tssr71243	transcription start site region 71243	1409 bp upstream
Tssr71244	transcription start site region 71244	1384 bp upstream
Tssr71245	transcription start site region 71245	1369 bp upstream
Tssr71246	transcription start site region 71246	1340 bp upstream
Tssr71247	transcription start site region 71247	1312 bp upstream