rs48573377 SNP Detail

Summary

• ID
  rs48573377
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:164379676 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTTTTGATGC TCTCCAGAGG GCTCCCTTGC CTTTTCCTCT
  GGCATCTGCT GTCTAGTCTC AGTGCAACTG TCATATTGGC CTAGTTAAAG CATAAAATAA
  Y
  TTGTGTTCAA ATGACTCCGT TGGCATCCTT AGACTGTCCT TTGAGGTTCT CCACATCATG
  TATTTTGGTC ACTCCACTGC ACGTCAGATG TCACTGTCC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145981057	ENSMUSSNP2478049	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48573377					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:164379676 () rs orientation: forward

Symbol	Name	Function Class
Gm70527	predicted gene, 70527	1959 bp downstream
Rr372378	regulatory region 372378	within coordinates
Rr422240	regulatory region 422240	823 bp distal
Rr422241	regulatory region 422241	468 bp proximal