rs48573623 SNP Detail

Summary

• ID
  rs48573623
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr16:11367367 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTTTTGTG ATTTATTCCA
  TTTTCAGTAT TTGTGAGTCC CTGCTTGCTT TTTTTAATGT CAAATTTTCA TATTTTCTAC
  ATGACTTTTA AAATTAGATC AGATTTGAAA GATTAATCAG TATTTAATTG CAATTTTATA
  AACTACCTGA GTCCTTAAGA GAAATTTGAT AGTTATTAAG CATAAGTGCT TGTCTGTCTG
  W
  TCTATAGAAT TCATTATTAT AAACAAAACA AGACACTTGG CTTAATCTGG AGTAGAGAAG
  CCCTGCAAAC AGCTCATATA ATTTATATGA AAGGAGTATT TCATGATATA ATATTTGATA
  AAATGTTTAT CCAGATCACA AGGTGGATGA CCAGGGTGCT GGTATTACAA GGATCCTGTC
  TGTCTTTGGA TCTGTCTGTC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63647867	NES17057580	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48573623					SNP	A	A	A	A	A	A	A	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63647867	NES17057580	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:11367367 () rs orientation: forward

Symbol	Name	Function Class
5830487K18Rik	RIKEN cDNA 5830487K18 gene	239 bp upstream
Snx29	sorting nexin 29	Intron