rs48573917 SNP Detail

Summary

• ID
  rs48573917
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:77836831 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAGGAAAAT ATTAAGTGTC
  TTTGTTTTCC ATAAGTGAAC TACTATGCTT CTCTCAAGGC AGAGCAGAAA TGCAGAGCAG
  AAATGCAGTC TGTAGTGGAC AGCAGCACTT AGGCTGAGCT CTGAGGTGTT TCAGCCGGCA
  TTGGCTGGGG TAAGGCAGGT TGCCGTAGGC AGTGCAGTGT TCATACGTGA GGGGGCAGGG
  K
  GCAGGGGCTC AGGCAGACAT GCCTTGGGTT CATTACGTGT TTGATGTGGA ATTAATTTTT
  GGTCATTGTG CATTCAAGAC TCTTTTACTG TTCCCAGCTT TGCATGTTGC TTTTTTCATG
  ATTTCCAGTA ACGTGACCTC TAGTTTAAAA AGTTGGGTCA TGGAAAAACC TTAAGGAAAA
  CCATAGAAAA ACCTTGGTAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss136662673	ENSMUSSNP2242233	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48573917					SNP	T	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:77836831 () rs orientation: forward

Symbol	Name	Function Class
Elovl5	ELOVL fatty acid elongase 5	within coordinates
Rr401538	regulatory region 401538	1316 bp upstream
Rr683432	regulatory region 683432	591 bp proximal
Rr683433	regulatory region 683433	1302 bp proximal